Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHF62486.1Hypothetical protein. (172 aa)    
Predicted Functional Partners:
rpl20
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
       0.802
AHF63767.1
Hypothetical protein.
  
     0.770
AHF63694.1
Hypothetical protein.
  
     0.767
AHF64056.1
Hypothetical protein.
  
     0.758
AHF64663.1
Hypothetical protein.
  
     0.746
AHF63656.1
Hypothetical protein.
  
     0.745
psaD
Photosystem I reaction center subunit II (PsaD).
  
   
 0.741
AHF63042.1
Hypothetical protein.
  
     0.739
psaF
Photosystem I reaction center subunit III (PsaF).
  
   
 0.738
psbP
Putative photosystem II oxygen-evolving complex 23K protein PsbP.
  
     0.726
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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