STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF62586.1Putative glycolate oxidase subunit (Fe-S) protein. (452 aa)    
Predicted Functional Partners:
glcD
Putative glycolate oxidase subunit GlcD.
 
 0.984
glcE
Putative glycolate oxidase subunit GlcE.
 
 
 0.980
AHF62716.1
2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase.
     
 0.904
spt
Serine:pyruvate/alanine:glyoxylate aminotransferase.
    
  0.904
AHF62899.1
HAD-superfamily hydrolase subfamily IA, variant 3.
    
 0.902
icd
Isocitrate dehydrogenase.
  
  
 0.681
AHF64220.1
Hypothetical protein.
 
  
 0.586
AHF62588.1
Hypothetical protein.
       0.585
AHF63691.1
Hypothetical protein.
 
  
 0.468
AHF62589.1
Hypothetical protein.
       0.443
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.