AHF62615.1 protein (Synechococcus sp. WH 8109)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AHF62615.1

ATPase. (252 aa)

Predicted Functional Partners:

AHF62616.1

0.999

AHF64513.1

0.999

AHF63892.1

0.866

AHF63620.1

0.680

AHF62618.1

0.640

AHF62949.1

0.613

rpsE

0.602

AHF62614.1

0.590

AHF63805.1

0.502

AHF64537.1

0.497

Your Current Organism:

Synechococcus sp. WH 8109

NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHF62614.1	AHF62615.1	Syncc8109_0199	Syncc8109_0200	Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.	ATPase.	0.590
AHF62614.1	AHF62616.1	Syncc8109_0199	Syncc8109_0201	Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.	Putative ABC transporter.	0.590
AHF62615.1	AHF62614.1	Syncc8109_0200	Syncc8109_0199	ATPase.	Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.	0.590
AHF62615.1	AHF62616.1	Syncc8109_0200	Syncc8109_0201	ATPase.	Putative ABC transporter.	0.999
AHF62615.1	AHF62618.1	Syncc8109_0200	Syncc8109_0203	ATPase.	ABC transporter, ATP binding component.	0.640
AHF62615.1	AHF62949.1	Syncc8109_0200	Syncc8109_0562	ATPase.	ATPase; Belongs to the ABC transporter superfamily.	0.613
AHF62615.1	AHF63620.1	Syncc8109_0200	Syncc8109_1252	ATPase.	ATPase; Belongs to the ABC transporter superfamily.	0.680
AHF62615.1	AHF63805.1	Syncc8109_0200	Syncc8109_1443	ATPase.	Putative permease.	0.502
AHF62615.1	AHF63892.1	Syncc8109_0200	Syncc8109_1531	ATPase.	Anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family.	0.866
AHF62615.1	AHF64513.1	Syncc8109_0200	Syncc8109_2184	ATPase.	Hypothetical protein; Belongs to the MlaE permease family.	0.999
AHF62615.1	AHF64537.1	Syncc8109_0200	Syncc8109_2208	ATPase.	Outer envelope membrane protein-like protein.	0.497
AHF62615.1	rpsE	Syncc8109_0200	Syncc8109_0364	ATPase.	Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.602
AHF62616.1	AHF62614.1	Syncc8109_0201	Syncc8109_0199	Putative ABC transporter.	Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.	0.590
AHF62616.1	AHF62615.1	Syncc8109_0201	Syncc8109_0200	Putative ABC transporter.	ATPase.	0.999
AHF62616.1	AHF63892.1	Syncc8109_0201	Syncc8109_1531	Putative ABC transporter.	Anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family.	0.837
AHF62616.1	AHF64513.1	Syncc8109_0201	Syncc8109_2184	Putative ABC transporter.	Hypothetical protein; Belongs to the MlaE permease family.	0.995
AHF62616.1	AHF64537.1	Syncc8109_0201	Syncc8109_2208	Putative ABC transporter.	Outer envelope membrane protein-like protein.	0.437
AHF62618.1	AHF62615.1	Syncc8109_0203	Syncc8109_0200	ABC transporter, ATP binding component.	ATPase.	0.640
AHF62618.1	AHF63620.1	Syncc8109_0203	Syncc8109_1252	ABC transporter, ATP binding component.	ATPase; Belongs to the ABC transporter superfamily.	0.528
AHF62618.1	rpsE	Syncc8109_0203	Syncc8109_0364	ABC transporter, ATP binding component.	Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.402