Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHF62616.1Putative ABC transporter. (286 aa)    
Predicted Functional Partners:
AHF62615.1
ATPase.
 
 0.999
AHF64513.1
Hypothetical protein; Belongs to the MlaE permease family.
 
 0.995
AHF63892.1
Anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.837
AHF64200.1
Hypothetical protein.
  
   
 0.788
AHF63770.1
Hypothetical protein.
  
   
 0.733
dnaJ-4
Heat shock protein DnaJ-like protein.
  
     0.715
AHF64023.1
Hypothetical protein.
 
   
 0.706
AHF64477.1
Hypothetical protein.
  
     0.706
ndhN
NADH dehydrogenase I subunit N; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.705
AHF62723.1
Hypothetical protein.
  
     0.700
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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