Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AHF62619.1 | AHF63690.1 | Syncc8109_0204 | Syncc8109_1326 | NUDIX hydrolase. | Putative ribonuclease II. | 0.665 |
| AHF62619.1 | deaD | Syncc8109_0204 | Syncc8109_0979 | NUDIX hydrolase. | DEAD/DEAH box helicase-like protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.930 |
| AHF62619.1 | rph | Syncc8109_0204 | Syncc8109_0269 | NUDIX hydrolase. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.769 |
| AHF62619.1 | zam | Syncc8109_0204 | Syncc8109_1353 | NUDIX hydrolase. | RNA binding S1; Belongs to the RNR ribonuclease family. | 0.665 |
| AHF62635.1 | rph | Syncc8109_0222 | Syncc8109_0269 | Ham1-like protein; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.942 |
| AHF63690.1 | AHF62619.1 | Syncc8109_1326 | Syncc8109_0204 | Putative ribonuclease II. | NUDIX hydrolase. | 0.665 |
| AHF63690.1 | rnd | Syncc8109_1326 | Syncc8109_0420 | Putative ribonuclease II. | 3'-5' exonuclease. | 0.802 |
| AHF63690.1 | rph | Syncc8109_1326 | Syncc8109_0269 | Putative ribonuclease II. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.900 |
| AHF63690.1 | zam | Syncc8109_1326 | Syncc8109_1353 | Putative ribonuclease II. | RNA binding S1; Belongs to the RNR ribonuclease family. | 0.644 |
| AHF64725.1 | deaD | Syncc8109_2408 | Syncc8109_0979 | ATP-dependent helicase HrpB. | DEAD/DEAH box helicase-like protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.960 |
| AHF64725.1 | rnd | Syncc8109_2408 | Syncc8109_0420 | ATP-dependent helicase HrpB. | 3'-5' exonuclease. | 0.898 |
| AHF64725.1 | rph | Syncc8109_2408 | Syncc8109_0269 | ATP-dependent helicase HrpB. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.704 |
| AHF64725.1 | rps11 | Syncc8109_2408 | Syncc8109_0358 | ATP-dependent helicase HrpB. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.923 |
| AHF64725.1 | rpsD | Syncc8109_2408 | Syncc8109_1936 | ATP-dependent helicase HrpB. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.939 |
| deaD | AHF62619.1 | Syncc8109_0979 | Syncc8109_0204 | DEAD/DEAH box helicase-like protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | NUDIX hydrolase. | 0.930 |
| deaD | AHF64725.1 | Syncc8109_0979 | Syncc8109_2408 | DEAD/DEAH box helicase-like protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | ATP-dependent helicase HrpB. | 0.960 |
| deaD | rnd | Syncc8109_0979 | Syncc8109_0420 | DEAD/DEAH box helicase-like protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 3'-5' exonuclease. | 0.686 |
| deaD | rph | Syncc8109_0979 | Syncc8109_0269 | DEAD/DEAH box helicase-like protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.663 |
| deaD | rps11 | Syncc8109_0979 | Syncc8109_0358 | DEAD/DEAH box helicase-like protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.863 |
| deaD | rpsD | Syncc8109_0979 | Syncc8109_1936 | DEAD/DEAH box helicase-like protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.898 |
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