STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
crtRBeta-carotene hydroxylase. (343 aa)    
Predicted Functional Partners:
crtL
Lycopene cyclase, beta and epsilon.
   
 
 0.904
AHF63719.1
Hypothetical protein.
  
     0.770
AHF62692.1
Hypothetical protein.
  
     0.759
AHF62797.1
Hypothetical protein.
  
     0.756
AHF63243.1
Hypothetical protein.
  
     0.755
secE
SecE subunit of protein translocation complex; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.755
hli3
Hli3.
  
     0.754
AHF62755.1
Hypothetical protein.
  
     0.723
AHF63260.1
Hypothetical protein.
  
     0.718
AHF64024.1
Hypothetical protein.
  
     0.711
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.