AHF62716.1 protein (Synechococcus sp. WH 8109)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AHF62716.1

2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase. (221 aa)

Predicted Functional Partners:

glcE

0.904

glcD

0.904

AHF62586.1

0.902

spt

0.900

AHF64015.1

0.899

pykF

0.887

pgi

0.866

tpiA

0.848

gap2

0.834

eno

0.829

Your Current Organism:

Synechococcus sp. WH 8109

NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHF62586.1	AHF62716.1	Syncc8109_0168	Syncc8109_0307	Putative glycolate oxidase subunit (Fe-S) protein.	2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase.	0.902
AHF62586.1	glcD	Syncc8109_0168	Syncc8109_0725	Putative glycolate oxidase subunit (Fe-S) protein.	Putative glycolate oxidase subunit GlcD.	0.983
AHF62586.1	glcE	Syncc8109_0168	Syncc8109_0166	Putative glycolate oxidase subunit (Fe-S) protein.	Putative glycolate oxidase subunit GlcE.	0.981
AHF62586.1	spt	Syncc8109_0168	Syncc8109_1473	Putative glycolate oxidase subunit (Fe-S) protein.	Serine:pyruvate/alanine:glyoxylate aminotransferase.	0.905
AHF62716.1	AHF62586.1	Syncc8109_0307	Syncc8109_0168	2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase.	Putative glycolate oxidase subunit (Fe-S) protein.	0.902
AHF62716.1	AHF64015.1	Syncc8109_0307	Syncc8109_1658	2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase.	Glucokinase; Belongs to the bacterial glucokinase family.	0.899
AHF62716.1	eno	Syncc8109_0307	Syncc8109_2586	2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase.	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.	0.829
AHF62716.1	gap2	Syncc8109_0307	Syncc8109_0030	2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase.	Glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	0.834
AHF62716.1	glcD	Syncc8109_0307	Syncc8109_0725	2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase.	Putative glycolate oxidase subunit GlcD.	0.904
AHF62716.1	glcE	Syncc8109_0307	Syncc8109_0166	2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase.	Putative glycolate oxidase subunit GlcE.	0.904
AHF62716.1	pgi	Syncc8109_0307	Syncc8109_1284	2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.866
AHF62716.1	pykF	Syncc8109_0307	Syncc8109_1240	2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.887
AHF62716.1	spt	Syncc8109_0307	Syncc8109_1473	2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase.	Serine:pyruvate/alanine:glyoxylate aminotransferase.	0.900
AHF62716.1	tpiA	Syncc8109_0307	Syncc8109_0858	2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase.	Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.	0.848
AHF64015.1	AHF62716.1	Syncc8109_1658	Syncc8109_0307	Glucokinase; Belongs to the bacterial glucokinase family.	2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase.	0.899
AHF64015.1	pgi	Syncc8109_1658	Syncc8109_1284	Glucokinase; Belongs to the bacterial glucokinase family.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.933
AHF64015.1	pykF	Syncc8109_1658	Syncc8109_1240	Glucokinase; Belongs to the bacterial glucokinase family.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.520
eno	AHF62716.1	Syncc8109_2586	Syncc8109_0307	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.	2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase.	0.829
eno	gap2	Syncc8109_2586	Syncc8109_0030	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.	Glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	0.952
eno	pgi	Syncc8109_2586	Syncc8109_1284	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.983