Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AHF62805.1 | rpl13 | Syncc8109_0401 | Syncc8109_0354 | Rhodanese-like protein. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.692 |
| AHF62805.1 | rpl17 | Syncc8109_0401 | Syncc8109_0356 | Rhodanese-like protein. | 50S ribosomal protein L17. | 0.740 |
| AHF62805.1 | truA | Syncc8109_0401 | Syncc8109_0355 | Rhodanese-like protein. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.830 |
| AHF62805.1 | ybeY | Syncc8109_0401 | Syncc8109_2554 | Rhodanese-like protein. | Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.755 |
| AHF64457.1 | truA | Syncc8109_2119 | Syncc8109_0355 | Putative cobalt transport protein. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.594 |
| panC | truA | Syncc8109_0433 | Syncc8109_0355 | Pantoate-beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. In the N-terminal section; belongs to the pantothenate synthetase family. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.685 |
| rpl13 | AHF62805.1 | Syncc8109_0354 | Syncc8109_0401 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Rhodanese-like protein. | 0.692 |
| rpl13 | rpl17 | Syncc8109_0354 | Syncc8109_0356 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L17. | 0.998 |
| rpl13 | rpoA | Syncc8109_0354 | Syncc8109_0357 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.987 |
| rpl13 | rps9 | Syncc8109_0354 | Syncc8109_0353 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
| rpl13 | truA | Syncc8109_0354 | Syncc8109_0355 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.655 |
| rpl13 | truB | Syncc8109_0354 | Syncc8109_2220 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.642 |
| rpl13 | ybeY | Syncc8109_0354 | Syncc8109_2554 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.742 |
| rpl17 | AHF62805.1 | Syncc8109_0356 | Syncc8109_0401 | 50S ribosomal protein L17. | Rhodanese-like protein. | 0.740 |
| rpl17 | rpl13 | Syncc8109_0356 | Syncc8109_0354 | 50S ribosomal protein L17. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.998 |
| rpl17 | rpoA | Syncc8109_0356 | Syncc8109_0357 | 50S ribosomal protein L17. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.992 |
| rpl17 | rps9 | Syncc8109_0356 | Syncc8109_0353 | 50S ribosomal protein L17. | SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. | 0.997 |
| rpl17 | truA | Syncc8109_0356 | Syncc8109_0355 | 50S ribosomal protein L17. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.940 |
| rpl17 | truB | Syncc8109_0356 | Syncc8109_2220 | 50S ribosomal protein L17. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.615 |
| rpl17 | ybeY | Syncc8109_0356 | Syncc8109_2554 | 50S ribosomal protein L17. | Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.850 |
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