STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF62834.1Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (159 aa)    
Predicted Functional Partners:
rpcF
Phycobilin lyase beta subunit.
       0.774
rpcE
Phycobilin lyase alpha subunit.
       0.774
cpcT
Hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
       0.773
AHF64420.1
Thioredoxin reductase.
  
 
 0.711
AHF63929.1
Putative arsenite transporter, ACR3 family.
  
  
 0.588
rpcA
R-phycocyanin II alpha subunit.
       0.566
pykF
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.497
trxA
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.496
trxA_1
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.496
rpcB
Phycocyanin, beta subunit.
       0.486
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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