STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpcSHypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. (203 aa)    
Predicted Functional Partners:
pebB
Phycoerythrobilin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of the C2 and C3(1) diene system of 15,16-dihydrobiliverdin; Belongs to the HY2 family.
 
   
 0.963
pebA
15,16 dihydrobiliverdin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of biliverdin IX-alpha at the C15 methine bridge; Belongs to the HY2 family.
 
   
 0.962
rpcB
Phycocyanin, beta subunit.
 
   
 0.919
rpcA
R-phycocyanin II alpha subunit.
 
   
 0.905
cpeB
C-phycoerythrin class I beta chain.
 
   
 0.891
cpcT
Hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
 
   
 0.880
rpcF
Phycobilin lyase beta subunit.
 
   
 0.875
rpcE
Phycobilin lyase alpha subunit.
 
   
 0.854
apcB
Allophycocyanin beta chain.
  
   
 0.848
apcA
Allophycocyanin alpha chain.
  
   
 0.846
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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