STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpeAC-phycoerythrin class I alpha chain. (164 aa)    
Predicted Functional Partners:
cpeB
C-phycoerythrin class I beta chain.
 
 
 0.999
cpeE
Putative phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.
  
 
 0.987
cpeC
Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.
  
 
 0.986
mpeC
C-phycoerythrin class II gamma chain, linker polypeptide; Belongs to the phycobilisome linker protein family.
  
 
 0.985
AHF62862.1
PBS lyase HEAT-like repeat protein.
 
  
 0.985
apcE
Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.
  
 
 0.985
mpeU
PBS lyase HEAT-like repeat protein.
  
  
 0.976
mpeB
C-phycoerythrin class II beta chain.
 
 
0.961
apcE-2
Anchor polypeptide LCM; Belongs to the phycobilisome linker protein family.
  
 
 
 0.947
apcC
Linker polypeptide, allophycocyanin-associated; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
  
 
 
 0.946
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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