Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHF62870.1Hypothetical protein. (198 aa)    
Predicted Functional Partners:
AHF63871.1
Hypothetical protein.
  
     0.774
AHF64219.1
Hypothetical protein.
  
     0.754
cpeC
Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.
 
     0.551
AHF62872.1
Putative phycobilisome polypeptide.
 
     0.504
cpcG2
Putative phycobilisome rod-core linker polypeptide (L-RC 28.5); Belongs to the phycobilisome linker protein family.
       0.499
apcE
Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.
 
     0.462
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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