STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpcG2Putative phycobilisome rod-core linker polypeptide (L-RC 28.5); Belongs to the phycobilisome linker protein family. (252 aa)    
Predicted Functional Partners:
rpcF
Phycobilin lyase beta subunit.
  
  
  0.976
rpcE
Phycobilin lyase alpha subunit.
  
  
  0.976
rpcA
R-phycocyanin II alpha subunit.
  
  
  0.976
rpcB
Phycocyanin, beta subunit.
  
  
  0.976
AHF63484.1
Putative phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.
  
  
 
0.927
cpcG1
Phycobilisome rod-core linker polypeptide cpcG (L-RC 28.5); Belongs to the phycobilisome linker protein family.
  
  
 
0.911
AHF62872.1
Putative phycobilisome polypeptide.
 
     0.898
cpcT
Hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
     0.774
apcD
Allophycocyanin alpha-B chain.
  
     0.774
apcA
Allophycocyanin alpha chain.
  
     0.774
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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