Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHF62907.1Hypothetical protein. (282 aa)    
Predicted Functional Partners:
rpcF
Phycobilin lyase beta subunit.
  
     0.760
rpcE
Phycobilin lyase alpha subunit.
  
     0.753
apcE-2
Anchor polypeptide LCM; Belongs to the phycobilisome linker protein family.
  
     0.748
AHF63335.1
Hypothetical protein.
  
     0.728
AHF62712.1
Hypothetical protein.
  
     0.719
cpcT
Hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
     0.713
AHF63892.1
Anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family.
  
    0.713
apcD
Allophycocyanin alpha-B chain.
  
     0.707
AHF62555.1
Hypothetical protein.
  
     0.702
AHF63645.1
Hypothetical protein.
  
     0.695
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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