STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF62949.1ATPase; Belongs to the ABC transporter superfamily. (392 aa)    
Predicted Functional Partners:
lacF
Lactose transport system permease protein.
 
 
 0.965
AHF63622.1
ABC transporter for possibly for trehalose/maltose, membrane component.
 
 
 0.964
AHF64374.1
Putative permease protein of sugar ABC transporter.
 
 
 0.958
AHF63621.1
ABC transporter, likely for trehalose/maltose, membrane component.
 
 
 0.956
AHF63620.1
ATPase; Belongs to the ABC transporter superfamily.
  
  
 
0.911
AHF62551.1
Twin-arginine translocation pathway signal.
 
 
 0.786
AHF63623.1
ABC transporter, likely sugar solute binding protein.
 
 
 0.757
obg
Small GTP-binding protein domain protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
       0.572
hisM
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
   
 0.417
drrB
Putative multidrug efflux ABC transporter.
     
 0.406
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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