AHF63020.1 protein (Synechococcus sp. WH 8109)

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Predicted Interactions

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Score

AHF63020.1

Hypothetical protein. (178 aa)

Predicted Functional Partners:

rpl32

0.966

rpsC

0.912

rplK

0.896

yidC

0.878

rpl1

0.876

rps6

0.871

rps2

0.867

rps16

0.865

infC

0.862

rpl13

0.862

Your Current Organism:

Synechococcus sp. WH 8109

NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHF63020.1	infC	Syncc8109_0635	Syncc8109_0112	Hypothetical protein.	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	0.862
AHF63020.1	rpl1	Syncc8109_0635	Syncc8109_2580	Hypothetical protein.	Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.876
AHF63020.1	rpl13	Syncc8109_0635	Syncc8109_0354	Hypothetical protein.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.862
AHF63020.1	rpl32	Syncc8109_0635	Syncc8109_1343	Hypothetical protein.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.966
AHF63020.1	rplK	Syncc8109_0635	Syncc8109_2581	Hypothetical protein.	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.896
AHF63020.1	rps16	Syncc8109_0635	Syncc8109_1846	Hypothetical protein.	30S Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.865
AHF63020.1	rps2	Syncc8109_0635	Syncc8109_1458	Hypothetical protein.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.867
AHF63020.1	rps6	Syncc8109_0635	Syncc8109_2747	Hypothetical protein.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.871
AHF63020.1	rpsC	Syncc8109_0635	Syncc8109_0374	Hypothetical protein.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.912
AHF63020.1	yidC	Syncc8109_0635	Syncc8109_0636	Hypothetical protein.	Similar to 60 kDa inner membrane protein family.	0.878
infC	AHF63020.1	Syncc8109_0112	Syncc8109_0635	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Hypothetical protein.	0.862
infC	rpl1	Syncc8109_0112	Syncc8109_2580	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.939
infC	rpl13	Syncc8109_0112	Syncc8109_0354	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.972
infC	rpl32	Syncc8109_0112	Syncc8109_1343	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.891
infC	rplK	Syncc8109_0112	Syncc8109_2581	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.953
infC	rps16	Syncc8109_0112	Syncc8109_1846	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	30S Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.933
infC	rps2	Syncc8109_0112	Syncc8109_1458	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.966
infC	rps6	Syncc8109_0112	Syncc8109_2747	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.961
infC	rpsC	Syncc8109_0112	Syncc8109_0374	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.966
rpl1	AHF63020.1	Syncc8109_2580	Syncc8109_0635	Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	Hypothetical protein.	0.876