STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glcDPutative glycolate oxidase subunit GlcD. (483 aa)    
Predicted Functional Partners:
AHF62586.1
Putative glycolate oxidase subunit (Fe-S) protein.
 
 0.984
glcE
Putative glycolate oxidase subunit GlcE.
 
  
 
0.974
AHF62716.1
2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase.
   
 
 0.905
AHF62899.1
HAD-superfamily hydrolase subfamily IA, variant 3.
    
 0.902
spt
Serine:pyruvate/alanine:glyoxylate aminotransferase.
  
 
 0.901
glsF
Glutamate synthase (NADPH).
     
 0.670
AHF63101.1
Putative cytidine/deoxycytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
  
    0.530
AHF63102.1
Hypothetical protein.
       0.530
hemL
Glutamate-1-semialdehyde-2,1-aminomutase.
       0.530
ndhD2
Proton-translocating NADH-quinone oxidoreductase, chain M.
      
 0.422
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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