Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHF63112.1Hypothetical protein; Belongs to the LarC family. (402 aa)    
Predicted Functional Partners:
AHF62808.1
Hypothetical protein.
 
 0.944
AHF64190.1
Putative circadian phase modifier CpmA.
 
  
 0.888
AHF63110.1
Hypothetical protein.
       0.811
AHF63113.1
Hypothetical protein.
       0.811
AHF63111.1
Hypothetical protein.
       0.774
AHF63114.1
Serine/threonine specific protein phosphatase.
       0.658
AHF63109.1
Hypothetical protein.
       0.547
AHF64480.1
Hypothetical protein.
 
    0.537
AHF63108.1
Hypothetical protein.
       0.526
AHF63045.1
Putative oxidoreductase, aldo/keto reductase family.
 
    0.425
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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