STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cobCPutative alpha-ribazole-5'-P phosphatase; Belongs to the phosphoglycerate mutase family. (442 aa)    
Predicted Functional Partners:
AHF63150.1
Putative dihydroorotase.
       0.811
ftsI
Peptidoglycan glycosyltransferase.
 
     0.677
AHF63152.1
Putative membrane associated protease.
  
    0.615
pykF
Pyruvate kinase; Belongs to the pyruvate kinase family.
 
   
 0.608
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 1 subfamily.
  
  
 0.595
glsF
Glutamate synthase (NADPH).
     
 0.564
cobJ
precorrin-3B C17-methyltransferase.
  
  
 0.559
AHF62466.1
DEAD/DEAH box helicase-like protein.
    
  0.556
AHF64908.1
DEAD/DEAH box helicase-like protein.
    
  0.556
AHF63153.1
Hypothetical protein.
       0.532
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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