STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hisMAmino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine. (324 aa)    
Predicted Functional Partners:
hisJ
Extracellular solute-binding protein, family 3.
 
 0.999
batB
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
 
0.999
glnQ
ATPase.
 0.999
AHF62949.1
ATPase; Belongs to the ABC transporter superfamily.
    
 0.934
futC
ATPase; Belongs to the ABC transporter superfamily.
   
 
 0.934
AHF63620.1
ATPase; Belongs to the ABC transporter superfamily.
    
 0.934
AHF64395.1
ABC transporter, substrate binding protein.
     
 0.934
AHF63546.1
ABC transporter component, possibly Mn transport.
     
 0.933
AHF63806.1
ATPase.
     
 0.933
drrB
Putative multidrug efflux ABC transporter.
     
 0.929
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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