STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acuCPutative histone deacetylase/AcuC/AphA family protein. (283 aa)    
Predicted Functional Partners:
htpG
ATP-binding region, ATPase-like protein.
    
 0.791
AHF63290.1
Hypothetical protein.
       0.773
AHF62466.1
DEAD/DEAH box helicase-like protein.
    
 0.751
AHF64908.1
DEAD/DEAH box helicase-like protein.
    
 0.751
AHF63019.1
ATPase.
    
 0.618
cbbX
ATPase.
    
 0.618
udk
Putative phosphoribulokinase/uridine kinase family protein.
   
 0.598
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
    
 0.544
serA
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.543
AHF63292.1
Hypothetical protein.
       0.519
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.