STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
crtHCarotenoid isomerase. (518 aa)    
Predicted Functional Partners:
crtQ
Carotene 7,8-desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
 
  
 0.978
crtL
Lycopene cyclase, beta and epsilon.
  
 
 0.918
crtB
Phytoene synthase.
 
  
 0.853
crtD
Carotene 7,8-desaturase.
 
   
 0.780
trmFO
Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.
       0.744
AHF63336.1
Hypothetical protein.
       0.713
chlD
Magnesium chelatase ATPase subunit D.
 
  
 0.700
AHF63333.1
Putative cation efflux transporter (CDF family).
       0.693
AHF63335.1
Hypothetical protein.
       0.657
chlG
Chlorophyll synthase, ChlG.
 
  
 0.641
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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