Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHF63335.1Hypothetical protein. (94 aa)    
Predicted Functional Partners:
AHF63336.1
Hypothetical protein.
 
     0.836
AHF65046.1
Hypothetical protein.
  
     0.767
AHF62555.1
Hypothetical protein.
  
     0.761
AHF62565.1
Hypothetical protein.
  
     0.760
rpcE
Phycobilin lyase alpha subunit.
  
     0.757
AHF65048.1
Hypothetical protein.
  
     0.757
AHF63111.1
Hypothetical protein.
  
     0.752
rpcF
Phycobilin lyase beta subunit.
  
     0.750
apcE-2
Anchor polypeptide LCM; Belongs to the phycobilisome linker protein family.
  
     0.746
AHF63148.1
Hypothetical protein.
  
     0.741
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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