Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
phoRHistidine kinase. (376 aa)    
Predicted Functional Partners:
phoB
Two component transcriptional regulator, winged helix family.
 
 0.998
rpaA
Two component transcriptional regulator, winged helix family.
 
 
 0.881
AHF62552.1
Two component transcriptional regulator, winged helix family.
  
 
 0.876
rpaB
Two component transcriptional regulator, winged helix family.
  
 
 0.873
AHF63338.1
Two component transcriptional regulator, winged helix family.
  
 
 0.856
AHF64845.1
Two component transcriptional regulator, LuxR family.
 
 
 0.827
rsuA
Pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family.
       0.811
AHF63386.1
Hypothetical protein.
     
 0.774
AHF64179.1
Two component transcriptional regulator, winged helix family.
  
 
 0.771
pdhB
Pyruvate dehydrogenase E1 beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.731
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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