Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHF63411.1Putative porin; Belongs to the OprB family. (523 aa)    
Predicted Functional Partners:
AHF62678.1
Hypothetical protein.
  
     0.772
AHF62677.1
Hypothetical protein.
  
     0.764
AHF64736.1
Putative RND family outer membrane efflux protein.
  
   
 0.760
AHF63062.1
Hypothetical protein.
  
    0.755
AHF64537.1
Outer envelope membrane protein-like protein.
  
   
 0.743
AHF64228.1
Cell division protein FtsQ.
  
   
 0.730
AHF62669.1
Hypothetical protein.
 
   
 0.699
AHF64832.1
Hypothetical protein.
  
     0.693
AHF63805.1
Putative permease.
  
     0.683
AHF62565.1
Hypothetical protein.
  
     0.675
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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