STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHF63422.1HTH of cAMP family transcriptional regulator. (182 aa)    
Predicted Functional Partners:
rpoZ
Putative DNA-directed RNA polymerase (omega chain); Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
   0.851
AHF64227.1
Hypothetical protein.
  
     0.772
AHF64397.1
Hypothetical protein.
  
    0.767
AHF63131.1
Hypothetical protein.
  
     0.766
AHF64005.1
Hypothetical protein.
  
     0.766
AHF64200.1
Hypothetical protein.
  
 
   0.763
AHF63186.1
Hypothetical protein.
  
     0.757
AHF64191.1
Hypothetical protein.
  
     0.746
AHF64039.1
Hypothetical protein.
  
 
  0.745
abrB
Transcriptional regulator AbrB.
  
     0.737
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.