AHF63549.1 protein (Synechococcus sp. WH 8109)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AHF63549.1

ATPase. (262 aa)

Predicted Functional Partners:

AHF63768.1

0.935

drrA

0.857

futC

0.847

hisM

0.824

AHF64792.1

0.824

drrB

0.818

batB

0.818

AHF63757.1

0.818

AHF63805.1

0.818

AHF63806.1

0.818

Your Current Organism:

Synechococcus sp. WH 8109

NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHF63549.1	AHF63757.1	Syncc8109_1179	Syncc8109_1394	ATPase.	Phosphonate-binding periplasmic protein.	0.818
AHF63549.1	AHF63768.1	Syncc8109_1179	Syncc8109_1405	ATPase.	ATPase.	0.935
AHF63549.1	AHF63805.1	Syncc8109_1179	Syncc8109_1443	ATPase.	Putative permease.	0.818
AHF63549.1	AHF63806.1	Syncc8109_1179	Syncc8109_1444	ATPase.	ATPase.	0.818
AHF63549.1	AHF64792.1	Syncc8109_1179	Syncc8109_2484	ATPase.	ATPase.	0.824
AHF63549.1	batB	Syncc8109_1179	Syncc8109_0878	ATPase.	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.	0.818
AHF63549.1	drrA	Syncc8109_1179	Syncc8109_0669	ATPase.	ATPase.	0.857
AHF63549.1	drrB	Syncc8109_1179	Syncc8109_0670	ATPase.	Putative multidrug efflux ABC transporter.	0.818
AHF63549.1	futC	Syncc8109_1179	Syncc8109_0736	ATPase.	ATPase; Belongs to the ABC transporter superfamily.	0.847
AHF63549.1	hisM	Syncc8109_1179	Syncc8109_0879	ATPase.	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.	0.824
AHF63757.1	AHF63549.1	Syncc8109_1394	Syncc8109_1179	Phosphonate-binding periplasmic protein.	ATPase.	0.818
AHF63757.1	AHF63768.1	Syncc8109_1394	Syncc8109_1405	Phosphonate-binding periplasmic protein.	ATPase.	0.929
AHF63757.1	AHF63805.1	Syncc8109_1394	Syncc8109_1443	Phosphonate-binding periplasmic protein.	Putative permease.	0.929
AHF63757.1	AHF63806.1	Syncc8109_1394	Syncc8109_1444	Phosphonate-binding periplasmic protein.	ATPase.	0.929
AHF63757.1	AHF64792.1	Syncc8109_1394	Syncc8109_2484	Phosphonate-binding periplasmic protein.	ATPase.	0.759
AHF63757.1	batB	Syncc8109_1394	Syncc8109_0878	Phosphonate-binding periplasmic protein.	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.	0.926
AHF63757.1	drrA	Syncc8109_1394	Syncc8109_0669	Phosphonate-binding periplasmic protein.	ATPase.	0.819
AHF63757.1	drrB	Syncc8109_1394	Syncc8109_0670	Phosphonate-binding periplasmic protein.	Putative multidrug efflux ABC transporter.	0.929
AHF63757.1	futC	Syncc8109_1394	Syncc8109_0736	Phosphonate-binding periplasmic protein.	ATPase; Belongs to the ABC transporter superfamily.	0.900
AHF63757.1	hisM	Syncc8109_1394	Syncc8109_0879	Phosphonate-binding periplasmic protein.	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.	0.929