STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF63578.1Exonuclease involved in mRNA processing. (320 aa)    
Predicted Functional Partners:
AHF63576.1
Putative ATP-dependent DNA ligase.
 
 0.992
pgmI
Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 0.945
AHF63006.1
Hypothetical protein.
    
  0.939
AHF63575.1
DEAD/DEAH box helicase-like protein.
 
    0.816
AHF63163.1
Hypothetical protein.
 
     0.812
AHF63149.1
Peptidase S26A, signal peptidase I; Belongs to the peptidase S26 family.
   
 
  0.760
acpP
Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis.
     
  0.752
AHF62441.1
RNA-binding region RNP-1 (RNA recognition motif).
    
 0.654
rbpD
RNA-binding region RNP-1 (RNA recognition motif).
    
 0.654
AHF63513.1
RNA-binding protein.
    
 0.654
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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