Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dacBD-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase. (435 aa)    
Predicted Functional Partners:
AHF62480.1
Peptidoglycan glycosyltransferase.
     
 0.908
ftsI
Peptidoglycan glycosyltransferase.
     
 0.908
AHF64250.1
Penicillin-binding protein 1A.
     
 0.908
AHF63811.1
Putative carboxypeptidase.
     
 0.906
AHF63657.1
Hypothetical protein.
       0.811
AHF63064.1
Hypothetical protein.
 
  
 0.689
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
     0.684
AHF63203.1
Hypothetical protein.
 
  
 0.660
AHF63656.1
Hypothetical protein.
       0.655
nifS
Putative cysteine desulfurase (class-V aminotransferase family).
       0.640
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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