csgA protein (Synechococcus sp. WH 8109) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

csgA

Putative CsgA C-factor signaling protein. (242 aa)

Predicted Functional Partners:

acpP

0.714

AHF64569.1

0.632

glsF

0.575

AHF63676.1

0.572

AHF63677.1

0.572

acuC

0.571

AHF64853.1

0.513

atpD

0.506

gcvT

0.480

AHF63585.1

0.455

Your Current Organism:

Synechococcus sp. WH 8109

NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHF63585.1	csgA	Syncc8109_1215	Syncc8109_1308	Putative transcripton factor.	Putative CsgA C-factor signaling protein.	0.455
AHF63676.1	AHF63677.1	Syncc8109_1309	Syncc8109_1310	Hypothetical protein.	Putative ATP adenylyltransferase.	0.786
AHF63676.1	csgA	Syncc8109_1309	Syncc8109_1308	Hypothetical protein.	Putative CsgA C-factor signaling protein.	0.572
AHF63677.1	AHF63676.1	Syncc8109_1310	Syncc8109_1309	Putative ATP adenylyltransferase.	Hypothetical protein.	0.786
AHF63677.1	csgA	Syncc8109_1310	Syncc8109_1308	Putative ATP adenylyltransferase.	Putative CsgA C-factor signaling protein.	0.572
AHF64569.1	AHF64853.1	Syncc8109_2243	Syncc8109_2546	Hypothetical protein.	O-succinylbenzoate--CoA ligase.	0.453
AHF64569.1	acuC	Syncc8109_2243	Syncc8109_0914	Hypothetical protein.	Putative histone deacetylase/AcuC/AphA family protein.	0.817
AHF64569.1	csgA	Syncc8109_2243	Syncc8109_1308	Hypothetical protein.	Putative CsgA C-factor signaling protein.	0.632
AHF64853.1	AHF64569.1	Syncc8109_2546	Syncc8109_2243	O-succinylbenzoate--CoA ligase.	Hypothetical protein.	0.453
AHF64853.1	acpP	Syncc8109_2546	Syncc8109_0149	O-succinylbenzoate--CoA ligase.	Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.982
AHF64853.1	csgA	Syncc8109_2546	Syncc8109_1308	O-succinylbenzoate--CoA ligase.	Putative CsgA C-factor signaling protein.	0.513
AHF64853.1	glsF	Syncc8109_2546	Syncc8109_0331	O-succinylbenzoate--CoA ligase.	Glutamate synthase (NADPH).	0.583
acpP	AHF64853.1	Syncc8109_0149	Syncc8109_2546	Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis.	O-succinylbenzoate--CoA ligase.	0.982
acpP	atpD	Syncc8109_0149	Syncc8109_2252	Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis.	ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.426
acpP	csgA	Syncc8109_0149	Syncc8109_1308	Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Putative CsgA C-factor signaling protein.	0.714
acpP	glsF	Syncc8109_0149	Syncc8109_0331	Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Glutamate synthase (NADPH).	0.402
acuC	AHF64569.1	Syncc8109_0914	Syncc8109_2243	Putative histone deacetylase/AcuC/AphA family protein.	Hypothetical protein.	0.817
acuC	atpD	Syncc8109_0914	Syncc8109_2252	Putative histone deacetylase/AcuC/AphA family protein.	ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.940
acuC	csgA	Syncc8109_0914	Syncc8109_1308	Putative histone deacetylase/AcuC/AphA family protein.	Putative CsgA C-factor signaling protein.	0.571
atpD	acpP	Syncc8109_2252	Syncc8109_0149	ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.426