zam protein (Synechococcus sp. WH 8109) - STRING interaction network

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Score

zam

RNA binding S1; Belongs to the RNR ribonuclease family. (773 aa)

Predicted Functional Partners:

rnd

0.896

rph

0.895

pnp

0.842

ubiX

0.811

AHF63718.1

0.811

rps7

0.691

AHF63719.1

0.688

rpsR

0.686

rps11

0.675

rps17

0.657

Your Current Organism:

Synechococcus sp. WH 8109

NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHF63718.1	AHF63719.1	Syncc8109_1355	Syncc8109_1356	Hypothetical protein.	Hypothetical protein.	0.688
AHF63718.1	ubiX	Syncc8109_1355	Syncc8109_1354	Hypothetical protein.	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.	0.811
AHF63718.1	zam	Syncc8109_1355	Syncc8109_1353	Hypothetical protein.	RNA binding S1; Belongs to the RNR ribonuclease family.	0.811
AHF63719.1	AHF63718.1	Syncc8109_1356	Syncc8109_1355	Hypothetical protein.	Hypothetical protein.	0.688
AHF63719.1	ubiX	Syncc8109_1356	Syncc8109_1354	Hypothetical protein.	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.	0.688
AHF63719.1	zam	Syncc8109_1356	Syncc8109_1353	Hypothetical protein.	RNA binding S1; Belongs to the RNR ribonuclease family.	0.688
pnp	rnd	Syncc8109_0629	Syncc8109_0420	RNA binding S1; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	3'-5' exonuclease.	0.838
pnp	rph	Syncc8109_0629	Syncc8109_0269	RNA binding S1; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.876
pnp	rps11	Syncc8109_0629	Syncc8109_0358	RNA binding S1; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.747
pnp	rps7	Syncc8109_0629	Syncc8109_0327	RNA binding S1; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.754
pnp	zam	Syncc8109_0629	Syncc8109_1353	RNA binding S1; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	RNA binding S1; Belongs to the RNR ribonuclease family.	0.842
rnd	pnp	Syncc8109_0420	Syncc8109_0629	3'-5' exonuclease.	RNA binding S1; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.838
rnd	rph	Syncc8109_0420	Syncc8109_0269	3'-5' exonuclease.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.966
rnd	rps11	Syncc8109_0420	Syncc8109_0358	3'-5' exonuclease.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.805
rnd	rps17	Syncc8109_0420	Syncc8109_0371	3'-5' exonuclease.	SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.763
rnd	rps7	Syncc8109_0420	Syncc8109_0327	3'-5' exonuclease.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.701
rnd	zam	Syncc8109_0420	Syncc8109_1353	3'-5' exonuclease.	RNA binding S1; Belongs to the RNR ribonuclease family.	0.896
rph	pnp	Syncc8109_0269	Syncc8109_0629	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	RNA binding S1; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.876
rph	rnd	Syncc8109_0269	Syncc8109_0420	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	3'-5' exonuclease.	0.966
rph	rps11	Syncc8109_0269	Syncc8109_0358	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.697