STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF63752.1Carboxyl-terminal protease; Belongs to the peptidase S41A family. (432 aa)    
Predicted Functional Partners:
AHF63754.1
Phage SPO1 DNA polymerase-related protein.
  
    0.651
gcpE
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
       0.601
pheT
phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.559
AHF63016.1
Peptidase M50, putative membrane-associated zinc metallopeptidase.
  
  
 0.538
AHF63755.1
Hypothetical protein.
       0.531
aspC
Aminotransferases class-I.
       0.438
AHF63757.1
Phosphonate-binding periplasmic protein.
       0.415
AHF63149.1
Peptidase S26A, signal peptidase I; Belongs to the peptidase S26 family.
 
   
 0.413
AHF63758.1
ATPase.
       0.413
AHF63759.1
Putative phosphonate ABC transporter.
       0.411
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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