Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHF63808.1Hypothetical protein. (118 aa)    
Predicted Functional Partners:
typA
GTP-binding protein TypA.
       0.811
AHF63805.1
Putative permease.
       0.682
AHF63806.1
ATPase.
       0.682
AHF63811.1
Putative carboxypeptidase.
       0.668
AHF63807.1
Hypothetical protein.
       0.622
ccsA
Putative heme transporter; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.
       0.604
AHF63810.1
Putative peptidase U32 family protein.
       0.601
AHF62574.1
Hypothetical protein.
  
     0.598
AHF64753.1
Hypothetical protein.
  
     0.544
AHF64477.1
Hypothetical protein.
  
     0.517
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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