Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
umuDPutative SOS mutagenesis protein UmuD; Belongs to the peptidase S24 family. (143 aa)    
Predicted Functional Partners:
umuC
DNA-directed DNA polymerase.
 
 0.992
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.972
pcrA
ATP-dependent DNA helicase PcrA.
     
 0.830
recB
Putative exodeoxyribonuclease V, beta subunit RecB.
     
 0.760
ruvA
DNA recombination protein, RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
   
 
 0.662
dnaQ
Putative DNA polymerase III, epsilon subunit.
 
 
 0.575
AHF63876.1
Hypothetical protein.
       0.565
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
  
 0.563
AHF63267.1
Hypothetical protein.
  
 
 0.521
dnaE
DNA polymerase III, alpha subunit.
    
 0.518
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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