petE protein (Synechococcus sp. WH 8109) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

petE

Type I copper blue protein: plastocyanin. (119 aa)

Predicted Functional Partners:

petJ

0.977

petF

0.954

petJ-2

0.949

petF1

0.948

petH

0.945

petF-2

0.937

petF3

0.934

petA

0.933

petF3-2

0.903

hemE

0.812

Your Current Organism:

Synechococcus sp. WH 8109

NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
hemE	petE	Syncc8109_1672	Syncc8109_1674	Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.	Type I copper blue protein: plastocyanin.	0.812
hemE	petJ	Syncc8109_1672	Syncc8109_1675	Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.	Putative cytochrome c6 (soluble cytochrome f) (cytochrome c553).	0.489
petA	petE	Syncc8109_0686	Syncc8109_1674	Apocytochrome f; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.	Type I copper blue protein: plastocyanin.	0.933
petA	petJ	Syncc8109_0686	Syncc8109_1675	Apocytochrome f; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.	Putative cytochrome c6 (soluble cytochrome f) (cytochrome c553).	0.471
petE	hemE	Syncc8109_1674	Syncc8109_1672	Type I copper blue protein: plastocyanin.	Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.	0.812
petE	petA	Syncc8109_1674	Syncc8109_0686	Type I copper blue protein: plastocyanin.	Apocytochrome f; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.	0.933
petE	petF	Syncc8109_1674	Syncc8109_1263	Type I copper blue protein: plastocyanin.	Ferredoxin.	0.954
petE	petF-2	Syncc8109_1674	Syncc8109_2229	Type I copper blue protein: plastocyanin.	Ferredoxin.	0.937
petE	petF1	Syncc8109_1674	Syncc8109_2266	Type I copper blue protein: plastocyanin.	Ferredoxin (2Fe-2S).	0.948
petE	petF3	Syncc8109_1674	Syncc8109_0795	Type I copper blue protein: plastocyanin.	Ferredoxin (2Fe-2S).	0.934
petE	petF3-2	Syncc8109_1674	Syncc8109_1171	Type I copper blue protein: plastocyanin.	Ferredoxin (2Fe-2S).	0.903
petE	petH	Syncc8109_1674	Syncc8109_2012	Type I copper blue protein: plastocyanin.	ferredoxin--NADP reductase (FNR).	0.945
petE	petJ	Syncc8109_1674	Syncc8109_1675	Type I copper blue protein: plastocyanin.	Putative cytochrome c6 (soluble cytochrome f) (cytochrome c553).	0.977
petE	petJ-2	Syncc8109_1674	Syncc8109_1695	Type I copper blue protein: plastocyanin.	Cytochrome c6 (soluble cytochrome f) (cytochrome c553).	0.949
petF	petE	Syncc8109_1263	Syncc8109_1674	Ferredoxin.	Type I copper blue protein: plastocyanin.	0.954
petF	petF-2	Syncc8109_1263	Syncc8109_2229	Ferredoxin.	Ferredoxin.	0.910
petF	petF1	Syncc8109_1263	Syncc8109_2266	Ferredoxin.	Ferredoxin (2Fe-2S).	0.913
petF	petF3	Syncc8109_1263	Syncc8109_0795	Ferredoxin.	Ferredoxin (2Fe-2S).	0.912
petF	petF3-2	Syncc8109_1263	Syncc8109_1171	Ferredoxin.	Ferredoxin (2Fe-2S).	0.913
petF	petH	Syncc8109_1263	Syncc8109_2012	Ferredoxin.	ferredoxin--NADP reductase (FNR).	0.979