STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
petJPutative cytochrome c6 (soluble cytochrome f) (cytochrome c553). (125 aa)    
Predicted Functional Partners:
petE
Type I copper blue protein: plastocyanin.
    
 0.977
petJ-2
Cytochrome c6 (soluble cytochrome f) (cytochrome c553).
  
  
  0.957
petH
ferredoxin--NADP reductase (FNR).
     
 0.950
petF
Ferredoxin.
     
 0.930
petF3
Ferredoxin (2Fe-2S).
     
 0.929
petF-2
Ferredoxin.
     
 0.929
petF1
Ferredoxin (2Fe-2S).
     
 0.915
petF3-2
Ferredoxin (2Fe-2S).
     
  0.900
psbV
Cytochrome c-550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.
 
   
 0.863
psbU
Photosystem II extrinsic protein (psbU); Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.
  
   
 0.782
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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