STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
petJPutative cytochrome c6 (soluble cytochrome f) (cytochrome c553). (125 aa)    
Predicted Functional Partners:
petJ-2
Cytochrome c6 (soluble cytochrome f) (cytochrome c553).
  
  
  0.957
psbV
Cytochrome c-550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.
 
   
 0.804
AHF64033.1
Hypothetical protein.
       0.773
AHF64034.1
Hypothetical protein.
       0.773
AHF64035.1
Hypothetical protein.
       0.773
psbU
Photosystem II extrinsic protein (psbU); Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.
  
   
 0.712
AHF64667.1
Hypothetical protein.
  
     0.698
apcF
Phycobilisome core component-allophycocyanin beta-18 subunit.
  
   
 0.691
pcyA
Ferredoxin-dependent biliverdin reductase; Belongs to the HY2 family.
  
     0.681
petE
Type I copper blue protein: plastocyanin.
     
 0.672
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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