Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHF64210.1Hypothetical protein. (217 aa)    
Predicted Functional Partners:
AHF63364.1
Hypothetical protein.
  
     0.652
trpC
Indole-3-glycerol-phosphate synthase; Belongs to the TrpC family.
       0.593
AHF64200.1
Hypothetical protein.
  
     0.541
AHF63099.1
Putative phosphoribosyltransferase family protein.
  
     0.522
lpdA
Putative dihydrolipoamide dehydrogenase.
       0.489
spoU-2
tRNA/rRNA methyltransferase (SpoU); Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.489
psaL
Putative photosystem I reaction center subunit XI (PsaL).
  
     0.480
AHF63843.1
Hypothetical protein.
  
     0.455
invA
Putative neutral invertase-like protein.
  
     0.432
AHF64062.1
Plastoquinol terminal oxidase.
  
     0.415
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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