STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF64220.1Hypothetical protein. (449 aa)    
Predicted Functional Partners:
codA
Putative cytosine deaminase.
 
     0.898
glcE
Putative glycolate oxidase subunit GlcE.
  
     0.737
AHF64222.1
Hypothetical protein.
       0.737
glsF
Glutamate synthase (NADPH).
     
 0.670
AHF64321.1
Creatininase.
     0.656
AHF62586.1
Putative glycolate oxidase subunit (Fe-S) protein.
 
  
 0.586
AHF64224.1
Hypothetical protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.529
AHF64223.1
Hypothetical protein.
       0.443
miaB
Protein of unknown function UPF0004; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.416
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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