STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbbXATPase. (301 aa)    
Predicted Functional Partners:
AHF64288.1
Hypothetical protein.
       0.775
chpX
CO2 hydration protein.
       0.664
ndhD2
Proton-translocating NADH-quinone oxidoreductase, chain M.
       0.664
ndhF3
NAD(P)H dehydrogenase, subunit NdhF3 family.
       0.660
acuC
Putative histone deacetylase/AcuC/AphA family protein.
    
 0.618
AHF63832.1
Small GTP-binding protein domain protein.
    
 0.562
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.558
AHF62939.1
Putative glycerol kinase; Belongs to the FGGY kinase family.
   
  0.547
htpG
ATP-binding region, ATPase-like protein.
   
 0.547
AHF64569.1
Hypothetical protein.
   
 0.514
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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