STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmK2Putative carbon dioxide concentrating mechanism protein CcmK. (178 aa)    
Predicted Functional Partners:
AHF64294.1
Putative carboxysome peptide A.
 
 
 
 0.931
AHF64293.1
Putative carboxysome peptide B.
 
 
 
 0.925
csoS2
Putative carboxysome structural peptide CsoS2.
 
   
 0.755
csoS3
Putative carboxysome shell polypeptide CsoS3.
 
   
 0.750
AHF64302.1
Hypothetical protein.
 
 
 
 0.733
AHF64288.1
Hypothetical protein.
 
     0.546
ndhF3
NAD(P)H dehydrogenase, subunit NdhF3 family.
     
 0.457
chpX
CO2 hydration protein.
     
 0.455
ndhD2
Proton-translocating NADH-quinone oxidoreductase, chain M.
     
 0.446
AHF64297.1
Hypothetical protein.
       0.441
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.