Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ccmK2Putative carbon dioxide concentrating mechanism protein CcmK. (178 aa)    
Predicted Functional Partners:
AHF64294.1
Putative carboxysome peptide A.
 
 
 
 0.929
AHF64293.1
Putative carboxysome peptide B.
 
 
 
 0.922
csoS2
Putative carboxysome structural peptide CsoS2.
 
 
 
 0.842
csoS3
Putative carboxysome shell polypeptide CsoS3.
 
   
 0.734
AHF64302.1
Hypothetical protein.
 
 
 
 0.561
AHF64288.1
Hypothetical protein.
 
     0.538
ndhF3
NAD(P)H dehydrogenase, subunit NdhF3 family.
     
 0.445
AHF64297.1
Hypothetical protein.
       0.441
chpX
CO2 hydration protein.
     
 0.439
ndhD2
Proton-translocating NADH-quinone oxidoreductase, chain M.
     
 0.439
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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