STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF64294.1Putative carboxysome peptide A. (103 aa)    
Predicted Functional Partners:
csoS3
Putative carboxysome shell polypeptide CsoS3.
 
     0.952
csoS2
Putative carboxysome structural peptide CsoS2.
 
     0.952
ccmK2
Putative carbon dioxide concentrating mechanism protein CcmK.
 
 
 
 0.931
AHF64302.1
Hypothetical protein.
 
 
 
 0.921
ccmK
Carboxysome shell peptide, CsoS1.
 
 
 
 0.880
AHF64288.1
Hypothetical protein.
 
     0.856
rbcS
Ribulose-bisphosphate carboxylase.
 
 
 
 0.830
AHF64293.1
Putative carboxysome peptide B.
 
    
0.819
AHF62897.1
Carbohydrate kinase, FGGY family.
  
     0.732
rbcL
Ribulose bisphosphate carboxylase, large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.
 
   
 0.571
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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