STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csoS2Putative carboxysome structural peptide CsoS2. (693 aa)    
Predicted Functional Partners:
csoS3
Putative carboxysome shell polypeptide CsoS3.
 
   
 0.969
AHF64293.1
Putative carboxysome peptide B.
 
     0.952
AHF64294.1
Putative carboxysome peptide A.
 
     0.952
AHF64288.1
Hypothetical protein.
 
     0.855
rbcL
Ribulose bisphosphate carboxylase, large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.
 
   
 0.842
rbcS
Ribulose-bisphosphate carboxylase.
 
   
 0.829
AHF64302.1
Hypothetical protein.
 
   
 0.796
ccmK2
Putative carbon dioxide concentrating mechanism protein CcmK.
 
   
 0.755
AHF62897.1
Carbohydrate kinase, FGGY family.
  
     0.735
AHF64943.1
Hypothetical protein.
  
     0.589
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.