Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHF64297.1Hypothetical protein. (17 aa)    
Predicted Functional Partners:
AHF64293.1
Putative carboxysome peptide B.
       0.547
AHF64294.1
Putative carboxysome peptide A.
       0.547
csoS3
Putative carboxysome shell polypeptide CsoS3.
       0.547
csoS2
Putative carboxysome structural peptide CsoS2.
       0.547
ccmK2
Putative carbon dioxide concentrating mechanism protein CcmK.
       0.441
rbcS
Ribulose-bisphosphate carboxylase.
       0.426
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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