Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ccmKCarboxysome shell peptide, CsoS1. (103 aa)    
Predicted Functional Partners:
AHF64294.1
Putative carboxysome peptide A.
 
 
 
 0.950
AHF64293.1
Putative carboxysome peptide B.
 
 
 
 0.880
rbcL
Ribulose bisphosphate carboxylase, large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.
     
 0.842
csoS2
Putative carboxysome structural peptide CsoS2.
 
 
 
 0.825
rbcS
Ribulose-bisphosphate carboxylase.
   
 
 0.803
csoS3
Putative carboxysome shell polypeptide CsoS3.
 
   
 0.619
AHF64302.1
Hypothetical protein.
 
 
 
 0.619
AHF64288.1
Hypothetical protein.
 
     0.501
ndhD2
Proton-translocating NADH-quinone oxidoreductase, chain M.
     
 0.466
ndhF3
NAD(P)H dehydrogenase, subunit NdhF3 family.
     
 0.420
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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