STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmKCarboxysome shell peptide, CsoS1. (103 aa)    
Predicted Functional Partners:
AHF64294.1
Putative carboxysome peptide A.
 
 
 
 0.880
AHF64293.1
Putative carboxysome peptide B.
 
 
 
 0.869
rbcL
Ribulose bisphosphate carboxylase, large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.
     
 0.852
rbcS
Ribulose-bisphosphate carboxylase.
   
 
 0.815
AHF64302.1
Hypothetical protein.
 
 
 
 0.769
csoS3
Putative carboxysome shell polypeptide CsoS3.
 
   
 0.582
csoS2
Putative carboxysome structural peptide CsoS2.
 
   
 0.556
ndhD2
Proton-translocating NADH-quinone oxidoreductase, chain M.
     
 0.445
ndhF3
NAD(P)H dehydrogenase, subunit NdhF3 family.
     
 0.437
AHF64288.1
Hypothetical protein.
 
     0.434
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.