ham1 protein (Synechococcus sp. WH 8109) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ham1

Ham1 protein-like protein. (202 aa)

Predicted Functional Partners:

murI

0.615

rph

0.537

guaA

0.528

nusG

0.464

pheT

0.455

folE

0.427

Your Current Organism:

Synechococcus sp. WH 8109

NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
folE	guaA	Syncc8109_1972	Syncc8109_0052	GTP cyclohydrolase I.	GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.566
folE	ham1	Syncc8109_1972	Syncc8109_1957	GTP cyclohydrolase I.	Ham1 protein-like protein.	0.427
guaA	folE	Syncc8109_0052	Syncc8109_1972	GMP synthase; Catalyzes the synthesis of GMP from XMP.	GTP cyclohydrolase I.	0.566
guaA	ham1	Syncc8109_0052	Syncc8109_1957	GMP synthase; Catalyzes the synthesis of GMP from XMP.	Ham1 protein-like protein.	0.528
guaA	pheT	Syncc8109_0052	Syncc8109_1323	GMP synthase; Catalyzes the synthesis of GMP from XMP.	phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.899
guaA	rph	Syncc8109_0052	Syncc8109_0269	GMP synthase; Catalyzes the synthesis of GMP from XMP.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.409
ham1	folE	Syncc8109_1957	Syncc8109_1972	Ham1 protein-like protein.	GTP cyclohydrolase I.	0.427
ham1	guaA	Syncc8109_1957	Syncc8109_0052	Ham1 protein-like protein.	GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.528
ham1	murI	Syncc8109_1957	Syncc8109_1552	Ham1 protein-like protein.	Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.	0.615
ham1	nusG	Syncc8109_1957	Syncc8109_2582	Ham1 protein-like protein.	NusG antitermination factor; Participates in transcription elongation, termination and antitermination.	0.464
ham1	pheT	Syncc8109_1957	Syncc8109_1323	Ham1 protein-like protein.	phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.455
ham1	rph	Syncc8109_1957	Syncc8109_0269	Ham1 protein-like protein.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.537
murI	ham1	Syncc8109_1552	Syncc8109_1957	Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.	Ham1 protein-like protein.	0.615
nusG	ham1	Syncc8109_2582	Syncc8109_1957	NusG antitermination factor; Participates in transcription elongation, termination and antitermination.	Ham1 protein-like protein.	0.464
nusG	pheT	Syncc8109_2582	Syncc8109_1323	NusG antitermination factor; Participates in transcription elongation, termination and antitermination.	phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.717
pheT	guaA	Syncc8109_1323	Syncc8109_0052	phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.899
pheT	ham1	Syncc8109_1323	Syncc8109_1957	phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	Ham1 protein-like protein.	0.455
pheT	nusG	Syncc8109_1323	Syncc8109_2582	phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	NusG antitermination factor; Participates in transcription elongation, termination and antitermination.	0.717
rph	guaA	Syncc8109_0269	Syncc8109_0052	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.409
rph	ham1	Syncc8109_0269	Syncc8109_1957	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	Ham1 protein-like protein.	0.537