Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHF64523.1Hypothetical protein. (190 aa)    
Predicted Functional Partners:
AHF64522.1
Hypothetical protein.
       0.786
AHF64877.1
Hypothetical protein.
  
     0.724
AHF64281.1
Hypothetical protein.
  
     0.720
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
       0.668
hupE
Putative hydrogenase accessory protein.
  
     0.662
AHF65007.1
Hypothetical protein.
  
     0.630
AHF64397.1
Hypothetical protein.
  
     0.610
AHF64525.1
Hypothetical protein.
       0.601
AHF64195.1
Hypothetical protein.
  
     0.567
AHF62669.1
Hypothetical protein.
  
     0.563
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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