STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pepPPutative aminopeptidase P; Belongs to the peptidase M24B family. (441 aa)    
Predicted Functional Partners:
AHF64439.1
Putative dihydrolipoamide acetyltransferase component (E2) of pyruvate.
 
 
 
 0.683
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
  0.672
AHF64584.1
Hypothetical protein.
  
    0.630
AHF64585.1
Small GTP-binding protein domain protein.
       0.625
nadD
Putative nicotinate-nucleotide adenylyltransferase; Belongs to the NadD family.
       0.625
pepN
Peptidase M, neutral zinc metallopeptidase, zinc-binding site.
  
 
 0.517
pheT
phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.447
gatA
glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
    
   0.446
ald
Alanine dehydrogenase; Belongs to the AlaDH/PNT family.
       0.442
pykF
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
  
 0.433
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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