STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpcG1Phycobilisome rod-core linker polypeptide cpcG (L-RC 28.5); Belongs to the phycobilisome linker protein family. (262 aa)    
Predicted Functional Partners:
rpcA
R-phycocyanin II alpha subunit.
  
 
 0.997
rpcB
Phycocyanin, beta subunit.
  
 
 0.997
rpcF
Phycobilin lyase beta subunit.
  
 
 0.979
rpcE
Phycobilin lyase alpha subunit.
  
 
 0.979
apcD
Allophycocyanin alpha-B chain.
  
 
 
 0.973
apcA
Allophycocyanin alpha chain.
  
 
 
 0.973
apcC
Linker polypeptide, allophycocyanin-associated; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
  
 
 
 0.973
apcF
Phycobilisome core component-allophycocyanin beta-18 subunit.
  
 
 
 0.972
apcB
Allophycocyanin beta chain.
  
 
 
 0.972
mpeB
C-phycoerythrin class II beta chain.
  
 
 
 0.935
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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