Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AHF64420.1 | hflX | Syncc8109_2081 | Syncc8109_2393 | Thioredoxin reductase. | Putative GTP-binding protein, transporter associated; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | 0.990 |
| AHF64420.1 | rpl24 | Syncc8109_2081 | Syncc8109_0369 | Thioredoxin reductase. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.435 |
| AHF64420.1 | rpl29 | Syncc8109_2081 | Syncc8109_0372 | Thioredoxin reductase. | Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.455 |
| hflX | AHF64420.1 | Syncc8109_2393 | Syncc8109_2081 | Putative GTP-binding protein, transporter associated; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | Thioredoxin reductase. | 0.990 |
| hflX | rpl13 | Syncc8109_2393 | Syncc8109_0354 | Putative GTP-binding protein, transporter associated; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.957 |
| hflX | rpl2 | Syncc8109_2393 | Syncc8109_0377 | Putative GTP-binding protein, transporter associated; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.954 |
| hflX | rpl24 | Syncc8109_2393 | Syncc8109_0369 | Putative GTP-binding protein, transporter associated; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.957 |
| hflX | rpl27 | Syncc8109_2393 | Syncc8109_2218 | Putative GTP-binding protein, transporter associated; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.955 |
| hflX | rpl29 | Syncc8109_2393 | Syncc8109_0372 | Putative GTP-binding protein, transporter associated; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.952 |
| hflX | rpl4 | Syncc8109_2393 | Syncc8109_0379 | Putative GTP-binding protein, transporter associated; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.969 |
| hflX | rpl6 | Syncc8109_2393 | Syncc8109_0366 | Putative GTP-binding protein, transporter associated; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.951 |
| hflX | rplK | Syncc8109_2393 | Syncc8109_2581 | Putative GTP-binding protein, transporter associated; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.972 |
| hflX | rplP | Syncc8109_2393 | Syncc8109_0373 | Putative GTP-binding protein, transporter associated; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.951 |
| rpl13 | hflX | Syncc8109_0354 | Syncc8109_2393 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Putative GTP-binding protein, transporter associated; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | 0.957 |
| rpl13 | rpl2 | Syncc8109_0354 | Syncc8109_0377 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.999 |
| rpl13 | rpl24 | Syncc8109_0354 | Syncc8109_0369 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.998 |
| rpl13 | rpl27 | Syncc8109_0354 | Syncc8109_2218 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.998 |
| rpl13 | rpl29 | Syncc8109_0354 | Syncc8109_0372 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.998 |
| rpl13 | rpl4 | Syncc8109_0354 | Syncc8109_0379 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.998 |
| rpl13 | rpl6 | Syncc8109_0354 | Syncc8109_0366 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.999 |
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