Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AHF64724.1 | AHF64725.1 | Syncc8109_2407 | Syncc8109_2408 | Hypothetical protein. | ATP-dependent helicase HrpB. | 0.714 |
| AHF64725.1 | AHF64724.1 | Syncc8109_2408 | Syncc8109_2407 | ATP-dependent helicase HrpB. | Hypothetical protein. | 0.714 |
| AHF64725.1 | deaD | Syncc8109_2408 | Syncc8109_0979 | ATP-dependent helicase HrpB. | DEAD/DEAH box helicase-like protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.960 |
| AHF64725.1 | fusA | Syncc8109_2408 | Syncc8109_0326 | ATP-dependent helicase HrpB. | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | 0.773 |
| AHF64725.1 | rnd | Syncc8109_2408 | Syncc8109_0420 | ATP-dependent helicase HrpB. | 3'-5' exonuclease. | 0.898 |
| AHF64725.1 | rps11 | Syncc8109_2408 | Syncc8109_0358 | ATP-dependent helicase HrpB. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.923 |
| AHF64725.1 | rps17 | Syncc8109_2408 | Syncc8109_0371 | ATP-dependent helicase HrpB. | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.740 |
| AHF64725.1 | rps1a | Syncc8109_2408 | Syncc8109_0501 | ATP-dependent helicase HrpB. | RNA binding S1. | 0.764 |
| AHF64725.1 | rps1b | Syncc8109_2408 | Syncc8109_1978 | ATP-dependent helicase HrpB. | RNA binding S1. | 0.764 |
| AHF64725.1 | rpsD | Syncc8109_2408 | Syncc8109_1936 | ATP-dependent helicase HrpB. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.939 |
| AHF64725.1 | rpsE | Syncc8109_2408 | Syncc8109_0364 | ATP-dependent helicase HrpB. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.848 |
| deaD | AHF64725.1 | Syncc8109_0979 | Syncc8109_2408 | DEAD/DEAH box helicase-like protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | ATP-dependent helicase HrpB. | 0.960 |
| deaD | fusA | Syncc8109_0979 | Syncc8109_0326 | DEAD/DEAH box helicase-like protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | 0.961 |
| deaD | rnd | Syncc8109_0979 | Syncc8109_0420 | DEAD/DEAH box helicase-like protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 3'-5' exonuclease. | 0.686 |
| deaD | rps11 | Syncc8109_0979 | Syncc8109_0358 | DEAD/DEAH box helicase-like protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.863 |
| deaD | rps17 | Syncc8109_0979 | Syncc8109_0371 | DEAD/DEAH box helicase-like protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.486 |
| deaD | rps1a | Syncc8109_0979 | Syncc8109_0501 | DEAD/DEAH box helicase-like protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | RNA binding S1. | 0.681 |
| deaD | rps1b | Syncc8109_0979 | Syncc8109_1978 | DEAD/DEAH box helicase-like protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | RNA binding S1. | 0.681 |
| deaD | rpsD | Syncc8109_0979 | Syncc8109_1936 | DEAD/DEAH box helicase-like protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.898 |
| deaD | rpsE | Syncc8109_0979 | Syncc8109_0364 | DEAD/DEAH box helicase-like protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.880 |
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